LYS_test

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Analyses
Analyses missing files are displayed in darker color.
Integrated
Small Scale Mutation
Copy Number Variation
Structure Variation
Fusion Gene
Oncovirus
Phased
Evolution
Viral Genome
Virus Integration
Local haplotype
Alleles Specific Expression
News
LandScape

v1.1.1

  • add manual selection of samples.
  • refine highlights of column and row in Light Theme.
Mut: On Genes

v1.0.7

  • use global exon number instead of index on protein layer.
  • resolve quotation marks in exported csv file.
  • apply the lollipop style.
  • add information text frame of mutation icons.
SNV: Context

v1.0.4

  • show single sample data.
  • show average data of multiple samples.
  • update MAF format demo data.
SNV: Signature

v1.0.2

  • refine the mutation order.
  • add colour themes of COSMIC and scientific journals.
Mut: Signature Dist

v1.0.2

  • add samples hierarchical clustering.
  • allow to flip tree by clicking node.
  • accept the scientific notation.
CNV: Haplotype View

v1.0.3

  • optimize tooltip content.
  • show tooltip on region segments.
  • show tooltip on cytoband.
  • show chr name beside chromosome.
  • optimize sidebar.
CNV: Focal Cluster (gistic)

v1.0.3

  • fix the 'empty line' error.
  • allow gene selection in cluster frames.
  • dash-line frame for omitted gene.
  • use gene orders from inputs.
  • fill up the omitted genome region.
  • optimize the frame arrangement.
SV: Reads Support

v1.0.2

  • fix genome axis labels.
  • maintain zoom level when base quality enabled.
  • refine axis breakpoint labels.
  • refine SV details at bottom left.
  • refine CJS interval.
  • refine PE with overlapped ends.
  • enable reads sorting.
  • display transcript name.
  • show alterations count in details window of reads.
SV: Heatmap

v1.0.3

  • add gene annotations.
  • refine sidebar.
  • add highlights and tooltips on unit windows.
  • refine SV event information.
  • refine size of download figure.
Fusion: Trans Junction

v1.0.4

  • check whether bkpos locates in exon of gene partner.
  • alert input file in aberrant format.
  • specific display for exon inner bkpos.
  • adjust exon notes in junction segment.
Virus: Integ HotSpot

v1.0.3

  • show strand color in minimap.
  • refine display of single strand.
  • refine info at the bottom left.
  • refine display during page refresh.
  • apply compressed data transmission.
  • refine the interval calculation.
  • add gene info in tooltip of integration arrow.
  • show text frame when arrow is clicked.
Motif analysis
Microhomology
Haplotype circus
Local genomic map
ASE details